Team observes how iron atoms alter grain boundary structures in titanium

by Meike Drießen, Ruhr-Universitaet-Bochum

Surprise at the grain boundary
Simulated grain boundary showing cage clustering (blue) at a titanium grain boundary. The blue atoms are titanium atoms in the vertices of the icosahedral cages, the red atoms are iron atoms and the gray atoms are other titanium atoms. Credit: Science (2024). DOI: 10.1126/science.adq4147

Using state-of-the-art microscopy and simulation techniques, an international research team has systematically observed how iron atoms alter the structure of grain boundaries in titanium. Their findings were published in the journal Science on October 25, 2024.

They were in for a surprise: “Iron atoms not only segregate to the interface, but they form entirely unexpected cage-like structures,” explains Prof. Dr. Christian Liebscher from the Research Center Future Energy Materials and Systems of the University Alliance Ruhr. The researchers did not expect such a behavior.

A new type of segregation behavior

Most technological materials have a polycrystalline structure: They are composed of different crystals, where atoms are arranged in a regular lattice. These crystals do not have the same orientation everywhere and the interfaces separating them are known as grain boundaries.

“These grain boundaries have an enormous influence on the durability and overall performance of a material,” says Dr. Vivek Devulapalli, who performed the microscopy work in the study. “But we have very limited understanding of what happens when elements segregate to grain boundaries and how they influence the properties of a material.”

The key to success was to observe and model the structures at atomic resolution. The researchers correlated their results from atomic-resolution scanning transmission electron microscopy with advanced computer simulations. A new grain boundary structure prediction algorithm was able to generate the experimentally observed structures and enabled study of their structure.

“Our simulations show that for different iron contents, we always find the cage structures as the underlying building blocks of different grain boundary phases. As the iron level increases at the grain boundary, more icosahedral units appear and eventually agglomerate,” explains Dr. Enze Chen from Stanford University. An icosahedron is a geometric object with 12 corners or vertices, in this case occupied by atoms, and 20 planes.

“We have identified more than five distinct structures or grain boundary phases of the same boundary, all composed of different arrangements of the same icosahedral cage units,” adds Dr. Timofey Frolov, who led the computational work of the study.

Quasicrystalline-like grain boundary phases

A closer inspection of the cage structures revealed that the atoms adopt an icosahedral arrangement with iron atoms being located at the center of the icosahedron and titanium atoms occupying its vertices. “The icosahedral cages enable a dense packing of iron atoms and since they can form aperiodic clusters, more than two to three times the amount of iron can be accommodated at the grain boundary,” explains Devulapalli.

“It appears as if iron is trapped inside of quasicrystalline-like grain boundary phases,” adds Chen.

“This is attributed to the properties of the icosahedral cages,” says Liebscher, “and we now need to find ways to study how they influence the interface properties and this material behavior.”

New pathways for materials design

Understanding and controlling the formation of icosahedral grain boundary phases with different structures and properties can potentially be used to tailor the properties of materials.

The researchers now want to systematically investigate how these novel grain boundary states can be used to tune material behavior, adjust a certain material functionality and to make materials more resilient against degradation processes.

More information: Vivek Devulapalli et al, Topological grain boundary segregation transitions, Science (2024). DOI: 10.1126/science.adq4147

Journal information: Science 

Provided by Ruhr-Universitaet-Bochum 

Scientists uncover key mechanism in pathogen defense, paving way for new antimicrobial strategies

by University of Sheffield

Scientists uncover key mechanism in pathogen defense, paving way for new antimicrobial strategies
Genomic organization and functional role of Zn-Macros. Credit: Journal of Biological Chemistry (2024). DOI: 10.1016/j.jbc.2024.107770

Researchers have made a significant breakthrough in understanding how certain pathogens defend themselves against the host’s immune system.

This collaborative study, led by scientists from the University of Sheffield, as well as other British, Dutch and Chinese institutions focuses on the role of a group of enzymes known as zinc-dependent macrodomains (Zn-Macros) in reversing ADP-ribosylation, a vital cellular process.

This discovery could lead to innovative treatments to combat antimicrobial resistance, a growing global health threat. The work is published in the Journal of Biological Chemistry.

ADP-ribosylation is a reversible modification of proteins and DNA that regulates important cellular responses to stress. While this signaling mechanism is well-studied in higher eukaryotes, where it regulates responses to DNA damage, reactive oxygen species and infection, the importance of its role in microorganisms is also becoming increasingly evident, which includes the regulation of the host immune response, microbial immune evasion and adaptation to specific hosts.

The research team used a combination of phylogenetic, biochemical, and structural approaches to investigate the function of Zn-Macros. These enzymes are found in some pathogenic microbes and are essential for removing ADP-ribosyl modifications, thereby helping the pathogens survive oxidative stress.

The study revealed that the catalytic activity of Zn-Macros is strictly dependent on a zinc ion within the active site of these enzymes. The researchers also identified structural features that contribute to substrate selectivity within different types of Zn-Macro enzymes, which may be exploited for the development of future therapies.

The findings have significant implications for the fight against bacterial and fungal infections that pose an increasing risk to human health, a problem that is exacerbated by the development of antimicrobial resistance and the emergence of multidrug-resistant strains. The World Health Organization has published lists of priority pathogens that pose the greatest risk, emphasizing the need for new antimicrobial strategies.

Addressing antimicrobial resistance will require a multifaceted strategy, including the discovery and characterization of new antimicrobial targets, along with assessing their potential for therapeutic use in innovative (co-)treatment approaches.

The authors of the study suggest that targeting the Zn-Macro pathway could reduce the virulence of major human pathogens, including Staphylococcus aureus and Streptococcus pyogenes. These pathogens rely on the crosstalk between lipoic acid metabolism and ADP-ribosylation signaling for their defense mechanisms. Disrupting this pathway could enhance the effectiveness of existing treatments and provide new therapeutic options.

The study’s findings represent a significant step forward in the fight against antimicrobial resistance and highlight the potential of Zn-Macros as therapeutic targets.

“Our findings uncover the evolutionary and molecular mechanisms behind ADP-ribosylation reversal by zinc-dependent macrodomains. By understanding this regulatory process, we can explore new avenues for drug development in diseases where ADP-ribosylation plays a critical role.

“I believe that further investigation into the physiological role of Zn-Macros could lead to the development of new antimicrobial therapies as these enzymes are primarily found in pathogenic microorganisms and have structurally distinct features that make them suitable for drug development,” says Dr. Antonio Ariza, university teaching associate.

More information: Antonio Ariza et al, Evolutionary and molecular basis of ADP-ribosylation reversal by zinc-dependent macrodomains, Journal of Biological Chemistry (2024). DOI: 10.1016/j.jbc.2024.107770

Journal information: Journal of Biological Chemistry 

Scientists explore scents to mimic beer and wine in non-alcoholic drinks

by American Chemical Society

beer and wine
Credit: Unsplash/CC0 Public Domain

Today, people increasingly seek non-alcoholic versions of beer or wine. Despite boasting different flavors, these two drinks share many aromas, which makes it difficult to produce alcohol-free versions that mimic the real thing. Researchers in the Journal of Agricultural and Food Chemistry report on a literature analysis and experiment to characterize the chemical compounds that give beer and wine their unique fragrances. They say their findings could aid the development of flavorful, non-alcoholic substitutes.

Food and beverage researchers are working to recreate the enjoyable aromas and flavors of beer and wine in alcohol-free substitutes. However, because both beer and wine are fermented, they have similar fragrances, and little is known about which scents evoke the unique character of each drink. So, Xingije Wang, Stephanie Frank and Martin Steinhaus set out to identify the key ingredients that distinguish the aroma of beer from that of wine.

First, the team conducted a literature review and identified the average proportions of 29 compounds from beer and 32 from wine that make up the drinks’ aromas. The researchers used these proportions like recipes to concoct standard beverages that smelled like either beer or wine.

From there, they tweaked these standards, swapping levels of select fragrances in the beer-like beverage to match those in the wine-like beverage, or vice versa, to test which ingredients influenced the perception of each drink. Trained taste-testers smelled each tweaked sample and evaluated it on a scale of beer-like to wine-like.

The researchers report that the taste-testers found that stronger fruity aromas made drinks smell more like wine. The team also swapped the entire profile of scented compounds from one standard into the opposite drink’s base liquid. They discovered that the scented compounds, rather than the base liquid, made the biggest difference in beer- versus wine-like aroma to the testers. The researchers say their results could be used to develop drinks that better mimic beer or wine while meeting consumers’ preferences for non-alcoholic options.

More information: Xingjie Wang et al, Molecular Insights into the Aroma Difference between Beer and Wine: A Meta-Analysis-Based Sensory Study Using Concentration Leveling Tests, Journal of Agricultural and Food Chemistry (2024). DOI: 10.1021/acs.jafc.4c06838

Journal information: Journal of Agricultural and Food Chemistry 

Scientists outline a roadmap for creating ‘Trojan horse’ peptides that cross biological barriers

by Macquarie University

New guide to developing 'Trojan horses' to cross biological barriers
A digital representation of a cell-penetrating peptide cluster. Credit: Daryl Ariawan

A new review of the research on cell-penetrating peptide (CPP) clusters by scientists from Macquarie University and Oxford University will provide a roadmap for biomedical scientists to develop the next generation of treatments for cancer and neurodegenerative diseases.

Biological barriers such as the blood-brain barrier and the plasma membrane, which protects neurons, prevent toxins from attacking the central nervous system, but they also stop potentially lifesaving treatments from reaching their intracellular targets.

More than half of the structures in the body that could potentially be affected by medicines are found inside the cells, making it vital to find ways of carrying large molecules like antibodies and genetic treatments across these biological barriers.

CPPs were first discovered three decades ago as a potential answer to the problem. They are cheap to produce, have a long history in research, and are easy to integrate into biologic drugs, but issues with their efficacy have meant that no therapies using them have yet been approved by the world’s regulatory bodies.

A breakthrough came two years ago, in the form of CPP clusters that could be created to carry cargos of antibodies, proteins, enzymes, and peptides across biological barriers.

Oxford University researchers created the first tricyclic CPP cluster, which was also the first in the world to transport functional antibodies into cells at low concentrations. At the same time, another research team from Nanyang Technological University in Singapore made a conceptually similar discovery, using a different agent to transport mRNA into cells.

Dr. Ole Tietz, one of the Oxford team, is now a Senior Research Fellow at the Macquarie University Dementia Research Centre (DRC). He says this breakthrough marked a fundamental shift in the understanding of how CPPs could be used.

“The key to successful CPP cluster carriers lies in arranging them in a specific configuration, so they can act as a key to the barrier’s lock,” he says. “These clusters are molecular Trojan horses, fooling the blood-brain barrier into allowing the molecules they’re carrying to cross over.

“Until now, many therapies have had to be administered in very high doses for a small amount to get through, and this can cause cytotoxicity, which can have very serious effects. There is a small therapeutic window with these treatments, after which you reach a concentration that is toxic and starts killing the cells instead.

“These new generation CPPs have the potential to allow us to deliver the minimum needed for treatment, which could improve patient outcomes dramatically.”

To help other biomedical scientists navigate the development and use of CPPs, Dr. Tietz’s team has written a systematic review, published in the latest edition of Trends in Chemistry, that collects all the research findings on this new class of CPP, effectively creating a roadmap to using the new paradigm.

Lead author, Joseph Reeman, a Master of Research student at Macquarie Medical School, says one of the key aspects of the paper is its provision of a set of design criteria.

“These guidelines will assist researchers in developing the next generation of intracellular therapeutics, with a focus on translation into clinical practice,” he says.

“We cover how to use existing CPP clusters with cargos and how to create new clusters, the outstanding questions of what needs to happen in the field, as well as some of what we are currently addressing through our research program.”

The team is currently developing a CPP cluster that they hope could be used as a “plug and play” carrier for various types of intracellular treatments, including antibodies and gene therapies. Animal testing has already shown it can penetrate the brain, and they are now investigating whether it can transport an antibody across the blood-brain barrier and into a neuron.

If successful, it could be used to target the pathogenic build-ups of the brain proteins TDP-43 and tau that are associated with neurodegenerative diseases including Alzheimer’s disease, frontotemporal dementia and motor neuron disease, which are a key research focus for DRC scientists.

More information: Joseph Reeman et al, Strength in numbers: cell penetrating peptide clusters to build next-generation therapeutics, Trends in Chemistry (2024). DOI: 10.1016/j.trechm.2024.09.003

Journal information: Trends in Chemistry 

Provided by Macquarie University 

Modified metal-organic framework can capture benzene in the atmosphere to tackle a major health risk

by Jessica Marsh, University of Manchester

Manchester scientists unveil advanced materials that capture benzene in our atmosphere, tackling major health risk
Schematic of decoration of defects by single-atom Zn(II) sites in MIL-125-defect. Credit: Nature Materials (2024). DOI: 10.1038/s41563-024-02029-1

Scientists have developed a new material capable of capturing the harmful chemical benzene from the polluted air, offering a potential solution for tackling a major health and environmental risk.

The study, led by scientists at The University of Manchester, has revealed that a material known as a metal-organic framework (MOF)—an ultra-porous material—can be modified to capture and filter out significantly more benzene from the atmosphere than current materials in use.

Benzene is primarily used as an industrial solvent and in the production of various chemicals, plastics, and synthetic fibers, but can also be released into the atmosphere through petrol stations, exhaust fumes and cigarette smoke. Despite its widespread applications, benzene is classified as a human carcinogen, and exposure can lead to serious health effects, making careful management and regulation essential.

The research, published in the journal Nature Materials today, could lead to significant improvements in air quality both indoors and outdoors.

“The removal of benzene at low concentrations has been a long-standing challenge, especially in real-world conditions. Current methods such as oxidation or biological treatment often struggle with efficiency and can produce hazardous by-products. This research tackles both of those problems and is an important step forward in addressing one of the most ubiquitous health and environmental challenges,” says senior researcher Martin Schröder, Professor of Chemistry at The University of Manchester.

MOFs are advanced materials that combine metal centers and organic molecules to create porous structures. They have a highly adjustable internal structure, making them particularly promising for filtering out harmful gases from the air.

The researchers modified the MOF structure—known as MIL-125—by incorporating single atoms from different elements, including zinc, iron, cobalt, nickel and copper to test which would most effectively capture benzene.

They discovered that adding a single zinc atom to the structure significantly enhanced the material’s efficiency, enabling it to capture benzene even at ultra-low concentrations—measured at parts per million (ppm)—a significant improvement over current materials.

The new material—now known as MIL-125-Zn—demonstrates a benzene uptake of 7.63 mmol per gram of material, which is significantly higher than previously reported materials.

It is also highly stable even when exposed to moisture, maintaining its ability to filter benzene for long periods without losing effectiveness. Tests show that it can continue removing benzene from air even under humid conditions.

“This breakthrough illustrates the power of atomic-level modifications in materials science. While our current research focuses on benzene, our design and methodology opens the door to adaptation to capture a wide range of air pollutants. The research provides a new approach for studying how these materials interact with gases, helping to develop more effective solutions for environmental and industrial challenges,” says co-lead researcher Sihai Yang, Professor of Chemistry at The University of Manchester.

As the research progresses, the team will look to collaborate with industry partners to develop this and related new materials, with the potential of integrating them into ready-made devices, such as air purification systems in homes, workplaces, and industrial settings.

More information: Yu Han et al, Trace benzene capture by decoration of structural defects in metal–organic framework materials, Nature Materials (2024). DOI: 10.1038/s41563-024-02029-1

Journal information: Nature Materials 

Advanced biodegradable plastics run rings around their predecessors

by Osaka University

Advanced biodegradable plastics run rings around their predecessors
Conceptual figure showing the enzymatically sustainable resources of poly(ε-caprolactone)-poly(urethane) (PCL-PU) with movable cross-links catalyzed by lipase as the enzyme. Credit: Yoshinori Takashima

Achieving a sustainable society requires the development of advanced degradable plastics, or polymers, which are molecules composed of long chains of repeating units. The goal of a resource-circulating society is now one step closer thanks to the efforts of a team from Osaka University that has developed tough biodegradable plastics by including movable crosslinking groups.

In a study published this month in Chem, the researchers have revealed that developing polymers with movable crosslinks not only increases their strength but also promotes degradation by enzymes under mild conditions.

Plastics and polymers need to achieve both desirable performance in terms of durability and strength, as well as triggerable degradation capability to enable their breakdown into useful components for reuse. At present, there is a tradeoff between these factors; i.e., increased toughness makes the polymer more difficult to degrade. The researchers have used movable crosslinks to resolve this problem.

The movable crosslinks are ring-like cyclodextrins, which are threaded on one polymer strand and attached to another, endowing the resulting plastics with increased toughness and durability. Cyclodextrins are nontoxic, biodegradable, and widely available, making them attractive as a polymer component.

“Our polymer design using movable cyclodextrin crosslinks increased polymer toughness by over eight times,” says lead author of the study Jiaxiong Liu. “Stiffness, ductility, fracture stress, and fracture strain all improved because the cyclodextrin groups effectively dispersed local stress.”

The cyclodextrin crosslinks also facilitated degradation of the polymers during subsequent enzymatic treatment because their bulky structure increased the free volume in the polymer network, which improved access of the enzyme to the target cleavage sites on the polymer chains.

“The polymers were readily degraded by Novozym 435, an enzyme that specifically attacks the ester bonds of the polymer backbone,” explains Yoshinori Takashima, senior author. “The presence of the bulky cyclodextrin crosslink groups decreased entanglement and aggregation of the polymer chains, which facilitated the access of the enzyme to the ester bonds for cleavage.” As a result, biodegradability was improved by twenty times compared with that of the polymer without cyclodextrin groups.

These advanced biodegradable plastics can readily be broken down by enzymes into useful precursor molecules that could be reused in further materials, suppressing waste generation and contributing to the development of a sustainable society.

More information: Exploring Enzymatic Degradation, Reinforcement, Recycling and Upcycling of Poly(ester)s-Poly(urethane) with Movable Crosslinks, Chem (2024). DOI: 10.1016/j.chempr.2024.09.026www.cell.com/chem/fulltext/S2451-9294(24)00494-7

Journal information: Chem 

Precise layering in catalysts offers an improved way for building sustainable chemicals

by Hillary Sanctuary, Ecole Polytechnique Federale de Lausanne

Precise layering in catalysts for building sustainable chemicals
Credit: Nature Catalysis (2024). DOI: 10.1038/s41929-024-01236-y

Motivated to turn greenhouse gases like carbon dioxide into high value chemicals like methanol, EPFL chemical engineers have developed a new method to make catalysts. Catalysts are major tools in the chemical industry and are largely made to make petrochemicals.

In this method, they have developed a way to build—with near atomic precision—metal clusters on solid supports that have the potential to improve catalytic activity. The results are published in Nature Catalysis.

“You want to produce as much product per time per catalyst as possible, and we’ve found that when a catalyst is prepared with near atomic precision, you get a more active material,” says Jeremy Luterbacher, professor at EPFL’s Laboratory of Sustainable and Catalytic Processing. “This technique is particularly interesting for difficult reactions like that of carbon dioxide with hydrogen gas for producing renewable methanol.”

A bit about catalysts

Though they are ubiquitous in industry, we most commonly interact with solid catalysts in the tailpipe of our car. There, a catalytic converter takes the exhaust from fuel combustion and helps to reduce the amount of toxic pollutants released into the air.

The engine of a car notably produces carbon monoxide (CO), an odorless and colorless toxic gas that, in high concentrations, can cause illness and death if inhaled. Inside the chamber is a catalyst, usually made of small platinum or palladium particles on a cheaper solid. This metal binds air and pollutants like carbon monoxide, and helps them react to produce the less toxic carbon dioxide (CO2) gas into the air.

“A reaction can happen without a catalyst at high temperature. For instance, burning carbon monoxide in a flame makes it possible for the carbon monoxide and oxygen to crash together to form carbon dioxide because they’re hot enough for the collision to be sufficiently powerful,” explains Luterbacher.

“With a catalyst, the carbon monoxide and the oxygen are bound to a metal surface and they can react despite colliding at a lower temperature. It’s like they’re ice-skating on the surface of the catalyzer and the surface helps the transformation between the pollutant and the reactant along.”

The catalysts of the future need to be able to turn carbon dioxide, a greenhouse gas that’s the largest source of renewable carbon on our planet, into high value gases like methanol. This process takes place in a chemical reaction referred to as a hydrogenation, a difficult reaction since it can produce many things other than methanol. Making a catalyst that is active enough to transform carbon dioxide fast enough to methanol without making other products is a significant challenge.

Precision layering of the catalyst

To make a solid catalyst, a metal particle is deposited on top of a material with high surface area like a porous powder, to maximize contact with the reactant.

Luterbacher and his team wondered if they could control and speed up reactions by precisely controlling the catalyst composition, notably by choosing just the right amount of material to tune how tightly reactants would bind to the catalyst.

They had discovered in previous research that they could deposit islands of metals with near atomic precision on solid supports, a method called liquid-phase atomic layer deposition (ALD), perfect for creating precise catalyst active sites for enabling a reaction.

Indeed, depositing these small islands or clusters of several metals with near atomic precision allowed the EPFL team to hydrogenate carbon dioxide at rates that were more than 10 times higher than with a catalyst of the same composition but built without this control.

They used magnesium oxide as the support, which usually binds carbon dioxide too tightly to be reactive, and they deposited small zirconia islands, which is a material that usually binds carbon dioxide too lightly. Then, they added copper to bind the hydrogen. When placed together in just the right proportions, they seemed to have the right mix to make a lot of methanol quickly and little of anything else.

“Magnesium oxide is widely recognized as a stable material for CO2 capture, but its strong affinity for CO2 has limited its use as a catalyst support. We turned this limitation into an opportunity by teaming it up with zirconia.

“Finding the optimal balance for CO2 affinity by combining MgO and ZrO2 with differing properties was only achievable through the powerful tool of liquid-phase atomic layer deposition,” says Seongmin Jin, former postdoctoral researcher at LPDC and lead author of the study.

“If we compare the amount of catalyst material to its copper content, then our catalyzer is more active than even commercial catalysts. Our activity per active site is also superior. It’s worth noting that our activity per weight of catalyst material is still inferior to commercial equivalents because we need to figure out how to make many more of these clusters on the surface.

“But we’ve shown that it’s possible to achieve very high control even at the atomic level, and this control appears to be very important. This opens the avenues to explore many combinations of metals or possibilities,” concludes Luterbacher.

More information: Seongmin Jin et al, Atom-by-atom design of Cu/ZrOx clusters on MgO for CO2 hydrogenation using liquid-phase atomic layer deposition, Nature Catalysis (2024). DOI: 10.1038/s41929-024-01236-y

Journal information: Nature Catalysis 

Provided by Ecole Polytechnique Federale de Lausanne 

Advanced graphics processing units lead to unprecedented speed for electronic structure calculations

by Pacific Northwest National Laboratory

Quarter petaFLOPS performance on a single DGX-H100 GPU node
A new benchmark for electronic structure calculations with graphics processing units has been achieved. Credit: Nathan Johnson | Pacific Northwest National Laboratory

A recent collaboration among researchers from HUN-REN Wigner Research Center for Physics in Hungary and the Department of Energy’s Pacific Northwest National Laboratory, along with industry collaborators SandboxAQ and NVIDIA, has achieved unprecedented speed and performance in efforts to model complex metal-containing molecules.

The collaboration resulted in 2.5 times the performance improvement over previous NVIDIA graphics processing unit (GPU) calculations and 80 times the acceleration compared to similar calculations using central processing unit (CPU) methods. The research study, recently published in the Journal of Chemical Theory and Computation, sets a new benchmark for electronic structure calculations.

Accelerating molecular modeling

The research team’s efforts have enabled unprecedented calculations for complex biochemical systems, which include transition metal metalloenzymes. Such metal-containing catalysts are crucial in numerous industrial and biological processes, playing an essential role in facilitating chemical reactions.

These powerhouses of energy conversion are vital for many industries, including medicine, energy and consumer products. They accelerate chemical reactions, lowering the energy required and making processes more efficient and sustainable. Understanding and optimizing these catalysts is essential for addressing global challenges, such as clean energy production and environmental sustainability.

“When you have one or more metals in your system, then you have a lot of electronic states that are very close in energy, but behave differently, and that’s why it’s really important to make sure that you describe them accurately,” said Sotiris Xantheas, a PNNL Lab Fellow, a co-author of the research study, and a chemical physicist who leads the Center for Scalable and Predictive methods for Excitation and Correlated phenomena (SPEC), as well as the Computational and Theoretical Chemistry Institute at PNNL.

Highly correlated quantum chemistry calculations

The recent advances have been made possible by bringing together academic and industry experts with expertise in the development of tensor network state algorithms and high performance computing, led by Örs Legeza, a co-PI of the SPEC project, and his group at the HUN-REN Wigner Research Center for Physics, in Hungary, working with SandboxAQ’s team of scientists, led by co-author Martin Ganahl, to perform quantum chemistry calculations on NVIDIA GPUs.

The diverse team contributions underscore the importance of collaboration and point to an exciting future for the field powered by GPUs. For instance, this work implemented the ab initio Density Matrix Renormalization Group method, which describes physical properties of large, complex electronic structures on all GPUs within a single node for the first time.

The goal of the research was to achieve efficient and accurate solutions to the many-body Schrödinger equation. These algorithms are crucial for understanding the electronic structures of molecules and materials and require computational power only available on a few computing systems worldwide.

The group’s collective expertise and shared resources have helped push the boundaries of quantum chemistry, allowing for rapid iteration and refinement in the study of highly correlated complex chemical systems. The project illustrates the potential of large-scale calculations to revolutionize how scientists approach challenging quantum chemistry problems.

“With advancing computational hardware and the extension to multi-GPU, multi-node architectures are expected to enable even more comprehensive calculations beyond the current capabilities,” said Legeza, who also holds an appointment as a research fellow at the Institute for Advanced Study at the Technical University of Munich.

“The ongoing collaboration aims to adopt large-scale GPU-accelerated calculations, further enhancing the efficiency and accuracy of quantum chemistry computations, utilizing even more recent hardware developments.”

As noted in the published study, chemists today largely rely on their intuition because rapid, highly accurate calculations are often unattainable. The ability to quickly iterate on different choices of large active spaces enables a more systematic search. Today’s GPU computing frameworks, combined with AI-guided physics and new methods for generating training data for large quantitative machine learning models, are expected to contribute to applications in energy, sustainability and health.

“The combination of NVIDIA’s state-of-the-art hardware with cutting-edge simulation techniques like tensor network algorithms for quantum chemistry has the potential to unlock an entirely new field of discovery,” said Ganahl.

More information: Andor Menczer et al, Parallel Implementation of the Density Matrix Renormalization Group Method Achieving a Quarter petaFLOPS Performance on a Single DGX-H100 GPU Node, Journal of Chemical Theory and Computation (2024). DOI: 10.1021/acs.jctc.4c00903

Provided by Pacific Northwest National Laboratory 

Metallic luster material can change color from silver to gold under UV light

by Chiba University

Turning silver to gold: A diacetylene derivative-based metallic luster materials
UV irradiation of diacetylene crystals obtained by forming a unique array structure changes the luster from silver to gold. Credit: Michinari Kohri from Chiba University

There have been many attempts to create monochromatic metallic materials, but few materials change luster color in response to external stimuli. In a recent breakthrough, researchers from Chiba University have prepared a diacetylene derivative-based metallic luster material that changes from silver to gold under UV irradiation.

These findings are expected to find applications in decorative items, printing inks, photomask patterning, UV laser lithography, and cosmetics.

Societies of the past and present have given high regard to precious metals like gold and silver. Both metals remind us of nobility and luxury. However, they are quite expensive, which restricts their applications. Therefore, materials with attractive but artificial gold- and silver-like metallic lusters are popular, finding use in jewelry, reflective materials, inks, and cosmetics.

Unfortunately, typical metallic luster materials cause environmental harm, rendering them unsustainable. Thus, scientists are actively searching for metal-free alternatives, examining organics such as thiophene, pyrrole, porphyrin, azobenzene, and stilbene derivatives. They have found some success in creating materials whose colors can be tuned by external stimuli while maintaining the metallic luster. However, the task still remains challenging.

Recently, a group of researchers from Chiba University, led by Professor Michinari Kohri and Kyoka Tachibana from the Graduate School of Engineering, in collaboration with scientists from Mitsubishi Pencil Co., Ltd., Tokyo University of Science, Keio University, and Yamagata University, has demonstrated the preparation of a metallic luster material that changes color from silver to gold under UV irradiation.

Their findings were published in ACS Applied Materials & Interfaces on September 14, 2024.

Highlighting the motivation behind this study, Prof. Kohri says, “Expanding on our earlier findings on biomimetic metallic luster materials, we conducted a targeted search for molecular structures capable of transitioning between silver and gold. This effort resulted in the identification of a novel material with desirable properties.”

In this study, researchers developed diacetylene (DA) derivative-based luster materials incorporating stilbenes via linkers at both ends, denoted as DS-DAn (where n represents the linker carbon number, ranging from 1 to 6). Varying n yielded diverse metallic luster and color change behaviors.

After several innovative experimental trials, the researchers observed that the stacked structure of platelet crystals comprising DS-DA1, the derivative with the shortest linker carbon chain, had a silver look. Its luster notably turned to gold upon UV irradiation, a remarkable external stimulus-based behavior.

The team attributed this to the unique crystal structure of DS-DA1 with two coexisting assembled states, revealing that partial topochemical polymerization (a polymerization method performed by monomers that are aligned in the crystal state) of DA within the structure modified its color tone from silver to gold.

The silver luster material developed in this study can express a golden luster selectively in specific areas using only light irradiation. It is also possible to add gradation colors of gold and silver. Thus, it has the potential to be useful in a variety of applications, such as decorative items, printing inks, and cosmetics.

“By eliminating metal components, our innovative material minimizes environmental footprint and weight. Moreover, its suitability for UV laser-based drawing techniques opens up new possibilities for high-end decorative printing. Further exploration of molecular structures may make it possible to express a wider variety of glossy colors,” concludes Prof. Kohri.

This work advances the fundamental science of DA polymerization and unlocks new opportunities for metallic luster materials with desirable properties in photomask patterning and UV laser lithography.

More information: Kyoka Tachibana et al, Silver to Gold Metallic Luster Changes in Stimuli-Responsive Diacetylene Derivatives Uniquely Arranged within Crystals, ACS Applied Materials & Interfaces (2024). DOI: 10.1021/acsami.4c14218

Journal information: ACS Applied Materials and Interfaces 

Bones from shipwreck suggest right- or left-handedness could affect how clavicle chemistry changes with age

by Public Library of Science

Bones from Tudor Mary Rose shipwreck suggest handedness might affect collarbone chemistry
The living ship, viewed from midships towards the bow. Scenes projected into the hull reflect activities performed in each area. The ‘players’ are the volunteers and staff, clad in copies of clothing and using replicas of artifacts. To the left is the main deck gallery containing the real artifacts, positioned opposite where they were found during the excavation. The sloping walkway follows the line of the main deck. Credit: Hufton + Crow; The Mary Rose Trust via Dr. Alex Hildred, CC-BY 4.0 (creativecommons.org/licenses/by/4.0/)

A new study of human skeletal remains from the wreck of the 16th century English warship “Mary Rose” suggests that whether a person is right- versus left-handed may influence how their clavicle bone chemistry changes as they age. Dr. Sheona Shankland of Lancaster University, U.K., and colleagues present these findings in the open-access journal PLOS ONE on October 30, 2024.

The Mary Rose was part of the Tudor navy during Henry VIII’s reign. On July 19, 1545, it sank while engaging French ships in the Battle of the Solent. Excavated in the late 20th century, the ship’s artifacts and the crew’s skeletal remains were notably well preserved, allowing for extensive research into the belongings, appearance, and health of the crew members.

Now, Dr. Shankland and colleagues contribute new insights into the biology of 12 men aged 13 to 40 who sank with the ship. This work explored how the chemistry of bone might adjust in response to physical activity and aging, so a person’s bone chemistry may hold clues about their lifestyle.

In this case, the researchers analyzed human clavicles (collarbones) from the wreck using a non-destructive laser technique called Raman spectroscopy to reveal bone chemistry.

The analysis focused on organic proteins and inorganic minerals, as they are the two main components of bone. It revealed that, among the 12 men, mineral content increased with age, while protein content decreased, albeit to a lesser degree.

These age-related changes were more pronounced in right clavicles than in left clavicles. A higher proportion of people are naturally right- than left-handed, and at the time when the Mary Rose sank, left-handedness was associated with witchcraft and therefore strongly discouraged.

So, assuming right-handed preference among the crew, this finding suggests that handedness may have affected their clavicle chemistry, perhaps through putting more stress on their right side during repeated ship-related activities.

The authors note that more research on the Mary Rose clavicles will be needed to better understand these findings. Nonetheless, this study could contribute to ongoing understanding of handedness and age-related changes in bone chemistry, with potential implications for risk of fracture, osteoarthritis, and other bone conditions.

Dr. Sheona Shankland adds, “Having grown up fascinated by the Mary Rose, it has been amazing to have the opportunity to work with these remains. The preservation of the bones and the non-destructive nature of the technique allows us to learn more about the lives of these sailors, but also furthers our understanding of the human skeleton, relevant to the modern world.”

Dr. Jemma Kerns adds, “It has been a privilege to work with these unique and precious human remains to learn more about life for sailors in the 16th century while finding out more about changes to bone composition as we age, which is relevant to today’s health, has been fascinating.”

Prof. Adam Taylor adds, “This study sheds new light on what we know about the clavicle and its mineralization. The bone plays a critical role in attaching your upper limb to the body and is one of the most commonly fractured bones.”

Dr. Alex Hildred adds, “Our museum is dedicated to the men who lost their lives defending their country. The hull is surrounded on three sides by galleries containing their possessions, and we continue to explore their lives through active research. The non-destructive nature of Raman spectroscopy makes it an ideal research tool for investigating human remains.

“We are delighted that the current research undertaken by Lancaster Medical School not only provides us with more information about the lives of our crew, but also demonstrates the versatility of Raman. The fact that this research has tangible benefits today, nearly 500 years after the ship sank, is both remarkable and humbling.”

More information: Shining light on the Mary Rose: Identifying chemical differences in human aging and handedness in the clavicles of sailors using Raman spectroscopy, PLOS ONE (2024). DOI: 10.1371/journal.pone.0311717

Journal information: PLoS ONE 

Provided by Public Library of Science